PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000935652
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 612aa    MW: 65626.7 Da    PI: 6.9543
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000935652genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30353411259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  MDP0000935652 353 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 411
                    7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-33337413IPR003657WRKY domain
SuperFamilySSF1182901.44E-27345413IPR003657WRKY domain
PROSITE profilePS5081129.677347413IPR003657WRKY domain
SMARTSM007741.5E-36352412IPR003657WRKY domain
PfamPF031062.7E-26354411IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MDKGWGLTLD SDSCGFLLNK PPTAAVKLDH NHNNNKRSSF FSGERMFSGM EFPVKLGSRE  60
EQTASQPSND NDRMVVDEVD FFSDRKNKLK SNSTDDHHQD SRSNDAMSVK KENWTGLDVN  120
TGLHLVTANT GSDQSMVDDG TSSDRADDKR AKNHELAQLQ VELQRMNAEN QRLKEMLGQV  180
TNNYSALQMH LAAVVQQQHN HTTAAPADQS SQLHHDQNAE AKADQGKKQG LVPRQFLNLG  240
PRATAEATDD QVSNSSSEAR TGSASPPQNI SEVASPKNGQ IGPLDPENSN TFRDGKRVGR  300
DESPESESEG WVPDKVPKLN NSAAPKPIDQ STEATMRKAR VSVRARSEAS MITDGCQWRK  360
YGQKMAKGNP CPRAYYRCTM AVGCPVRKQV QRCAEDRTIL ITTYEGNHNH PLPPAAMAMA  420
STTTAAASML LSGSMSSADG MNMNPNNLLA RAILPCSSSV ATISASAPFP TVTLDLTTSP  480
SHVQRPNTPF QVPNFPGXPP SFGAASHXLP QVFGQALYNQ SKFSGLQLSQ DTMGSTSSQX  540
QMQQTQSSSF ADTVSAITAD PSFTAALAAA ITSIIGGGAH PSNTTTNSAS PMSNNSSGAN  600
NNNKISGFPG N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22339415176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.112010.0bud| cell culture| fruit| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1129050.0JX112905.1 Malus hupehensis WRKY transcription factor 42 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364089.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9C5191e-166WRKY6_ARATH; WRKY transcription factor 6
TrEMBLV9MH480.0V9MH48_9R
STRINGPOPTR_0004s00890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-142WRKY family protein